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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ush1c, Usher syndrome 1C
Sequence ID:NM_001163733
NM_023649
NM_153677
Entrez Gene ID:72088
Ensembl ID:ENSMUSG00000030838

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 B4|7 23.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 46195356 - 46238490

 Exon Info From UCSC:
NM_001163733
NM_023649
NM_153677

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4217086Full LengthBC010819Usher syndrome 1C homolog (human)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_710143  NP_076138  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163733 NP_001157205    
NM_023649 NP_076138   PDZ
NM_153677 NP_710143 Q9ES64 PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AF228924 AAG12457 Q9ES64
AF228925 AAG12458 Q9ES64
BC010819 AAH10819 Q9ES64
AY103465 AAM44072 Q9ES64
AY246556 AAP72375 Q6XA19
AK008274 BAB25568 Q9ES64
AK036542 BAC29468 Q8CB92

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ush1c NP_710143 H.sapiens USH1C 10083 Gene Info NP_710142 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)