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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pdlim5, PDZ and LIM domain 5
Sequence ID:NM_001190852
NM_001190853
NM_001190854
NM_001190855
NM_001190856
NM_001190857
NM_019808
NM_019809
NM_022554
Entrez Gene ID:56376
Ensembl ID:ENSMUSG00000028273

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 H3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 142242656 - 142395618

 Exon Info From UCSC:
NM_001190852
NM_001190853
NM_001190854
NM_001190855
NM_001190856
NM_001190857
NM_019808
NM_019809
NM_022554

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4457868Full LengthBC037476PDZ and LIM domain 5
4016692IncompleteBC020145PDZ and LIM domain 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062783  NP_072048  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190852 NP_001177781    
NM_001190853 NP_001177782    
NM_001190854 NP_001177783    
NM_001190855 NP_001177784    
NM_001190856 NP_001177785    
NM_001190857 NP_001177786    
NM_019808 NP_062782 Q8CI51  
NM_019809 NP_062783   PDZ
NM_022554 NP_072048   PDZ

Related Sequences

 
mRNAGenPeptSwissProt
BC020145 AAH20145 Q8VDV4
BC037476 AAH37476 Q8CI51
DQ177283 ABB03726 Q2Q7P0
HM369794 ADI88504 D9J2Z9
HM369795 ADI88505 D9J300
HM369796 ADI88506 D9J301
HM369797 ADI88507 D9J302
HM369798 ADI88508 D9J303
AB016586 BAA88827 Q8CI51
AB016587 BAA88828 Q8CI51
AB016588 BAA88829 Q8CI51
AK003194 BAB22633 Q9CRA2
AK009464 BAB26304 Q9CRA2
AK147999 BAE28279 Q8CI51

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pdlim5 NP_062782 R.norvegicus Pdlim5 64353   NP_445778 96
H.sapiens PDLIM5 10611 Gene Info NP_006448 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)