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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tlr5, toll-like receptor 5
Sequence ID:NM_016928
Entrez Gene ID:53791
Ensembl ID:ENSMUSG00000079164

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H5|1 98.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 182972176 - 182976429

NM_016928 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
195184884918184885012
96223184899144184899271
224325184902501184902602
3263161184903301184906136
31643172184906142184906150
31733178184906152184906157
31793194184906159184906174

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40043826Full LengthBC125240toll-like receptor 5
40048274Full LengthBC125261toll-like receptor 5
40055024Full LengthBC125247toll-like receptor 5

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016928 NP_058624    

Related Sequences

 
mRNAGenPeptSwissProt
AF186107 AAF65625 Q9JLF7
BC125240 AAI25241 Q05AH3
BC125247 AAI25248 Q05AH3
BC125261 AAI25262 Q05AH3
AK036842 BAC29603 Q8CB40

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tlr5 NP_058624 R.norvegicus Tlr5 289337   NP_001139300 87
H.sapiens TLR5 7100 Gene Info NP_003259 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)