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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccl20, chemokine (C-C motif) ligand 20
Sequence ID:NM_001159738
NM_016960
Entrez Gene ID:20297
Ensembl ID:ENSMUSG00000026166

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C5|1 52.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 83116781 - 83119166

 Exon Info From UCSC:
NM_001159738
NM_016960

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1380543Full LengthBC028504chemokine (C-C motif) ligand 20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058656  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001159738 NP_001153210    
NM_016960 NP_058656 O89093
Q54AI7
IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF053313 AAC78295 O89093
Q54AI7
AF099052 AAC78680 O89093
Q642U4
BC028504 AAH28504 Q642U4
AB015136 BAA76955 O89093
Q54AI7
AJ222694 CAA10948 O89093
Q54AI7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccl20 NP_058656 R.norvegicus Ccl20 29538   NP_062106 73
H.sapiens CCL20 6364 Gene Info NP_004582 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)