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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cobra1, cofactor of BRCA1
Sequence ID:NM_021393
Entrez Gene ID:58202
Ensembl ID:ENSMUSG00000013465

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 25199716 - 25211381

 Exon Info From UCSC:
NM_021393

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3155904Full LengthBC004762cofactor of BRCA1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067368  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021393 NP_067368 Q8C4Y3 COBRA1

Related Sequences

 
mRNAGenPeptSwissProt
BC004762 AAH04762 Q8C4Y3
AB041607 BAA95090 Q8C4Y3
AK173124 BAD32402 Q69ZP4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cobra1 NP_067368 R.norvegicus Cobra1 311796   NP_001101287 99
H.sapiens COBRA1 25920 Gene Info NP_056271 96
A.gambiae AgaP_AGAP012109 1280567   XP_320419 55
D.melanogaster NELF-B 31681   NP_572402 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)