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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. H2-Oa, Histocompatibility 2, O region alpha locus
Sequence ID:NM_008206
Entrez Gene ID:15001
Ensembl ID:ENSMUSG00000024334

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.52

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34092382 - 34095231

NM_008206 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11503422932334229472
1513993423077734231025
4006813423125234231533
6828173423162734231762
81810493423194734232178

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862018Full LengthBC138996histocompatibility 2, O region alpha locus
8862019Full LengthBC138997histocompatibility 2, O region alpha locus

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032232  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008206 NP_032232 Q31150 MHC_II_alpha
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
M95514 AAB46387 Q31150
BC138996 AAI38997 B2RST7
BC138997 AAI38998 B2RST7
AK020594 BAB32142 Q9QWV1
AK170742 BAE41995 Q9QWV1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-Oa NP_032232 R.norvegicus RT1-DOa 24984   NP_898874 89
H.sapiens HLA-DOA 3111 Gene Info NP_002110 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)