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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cd320, CD320 antigen
Sequence ID:NM_019421
Entrez Gene ID:54219
Ensembl ID:ENSMUSG00000002308

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 33843116 - 33848751

NM_019421 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12013398003533980235
2023273398296033983085
3285583398443933984669
5597203398496133985122
72122093398523033986718

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3991556Full LengthBC026888CD320 antigen

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062294  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019421 NP_062294 Q9Z1P5 Ldl_recept_a

Related Sequences

 
mRNAGenPeptSwissProt
BC026888 AAH26888 Q9Z1P5
AK021187 BAB32321 Q9Z1P5
AK078151 BAC37150 Q9Z1P5
AK088189 BAC40198 Q9Z1P5
AK131655 BAE20743 Q9Z1P5
AK140204 BAE24278 Q9Z1P5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cd320 NP_062294 R.norvegicus Cd320 362851   NP_001014223 87
H.sapiens CD320 51293 Gene Info NP_057663 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)