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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Limd1, LIM domains containing 1
Sequence ID:NM_013860
Entrez Gene ID:29806
Ensembl ID:ENSMUSG00000025239

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F|9 70.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 123478705 - 123521517

NM_013860 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11921123387818123389738
19222023123409248123409349
20242091123419625123419692
20922154123420333123420395
21552285123425892123426022
22862337123426480123426531
23382406123427213123427281
24074851123428223123430667

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5703026Full LengthBC056449LIM domains containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038888  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013860 NP_038888 Q9QXD8 LIM

Related Sequences

 
mRNAGenPeptSwissProt
BC056449 AAH56449 Q9QXD8
AK004806 BAB23578 Q9QXD8
AK047198 BAC32988 Q9QXD8
AJ132409 CAB63700 Q9QXD8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Limd1 NP_038888 R.norvegicus Limd1 316101   NP_001106208 94
H.sapiens LIMD1 8994 Gene Info NP_055055 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)