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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cirh1a, cirrhosis, autosomal recessive 1A (human)
Sequence ID:NM_011574
Entrez Gene ID:21771
Ensembl ID:ENSMUSG00000041438

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8 D3|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 106893655 - 106923087

 Exon Info From UCSC:
NM_011574

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4948207Full LengthBC027399cirrhosis, autosomal recessive 1A (human)
5707865Full LengthBC068113cirrhosis, autosomal recessive 1A (human)
3498496IncompleteBC018262cirrhosis, autosomal recessive 1A (human)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035704  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011574 NP_035704 Q8R2N2 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC018262 AAH18262 Q8R2N2
BC027399 AAH27399 Q8R2N2
BC068113 AAH68113 Q8R2N2
AK173318 BAD32596 Q8R2N2
AK146263 BAE27022 Q3UJY3
X80433 CAA56628 Q8R2N2
X80434 CAA56629 Q8R2N2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cirh1a NP_035704 R.norvegicus Cirh1a 291987   NP_001009640 97
H.sapiens CIRH1A 84916 Gene Info NP_116219 90
S.pombe SPBC19F5.02c 2540514   NP_596540 32
A.thaliana AT4G07410 826172   NP_567317 30
S.cerevisiae UTP4 851924   NP_010611 29
A.gambiae AgaP_AGAP006092 1276765   XP_316150 29
A.thaliana AT1G27470 839638   NP_174067 29
D.melanogaster CG5018 39774   NP_648846 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)