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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tnfsf10, tumor necrosis factor (ligand) superfamily, member 10
Sequence ID:NM_009425
Entrez Gene ID:22035
Ensembl ID:ENSMUSG00000039304

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 A3|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 27338450 - 27339664

NM_009425 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12142721599827216211
2153522722485427224991
3533952722797427228016
3965002723298527233089
50149442723414327238586

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861829Full LengthBC138807tumor necrosis factor (ligand) superfamily, member 10
8861830Full LengthBC138808tumor necrosis factor (ligand) superfamily, member 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033451  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009425 NP_033451 P50592
Q3U5H0
TNF

Related Sequences

 
mRNAGenPeptSwissProt
U37522 AAC52345 P50592
Q3U5H0
BC138807 AAI38808 Q3U5H0
BC138808 AAI38809 Q3U5H0
AK142960 BAE25231 Q3UQ13
AK153581 BAE32108 P50592
Q3U5H0
AK157633 BAE34141 Q3TZR6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tnfsf10 NP_033451 R.norvegicus Tnfsf10 246775   NP_663714 86
H.sapiens TNFSF10 8743 Gene Info NP_003801 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta