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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Slc1a5, solute carrier family 1 (neutral amino acid transporter), member 5
Sequence ID:NM_009201
Entrez Gene ID:20514
Ensembl ID:ENSMUSG00000001918

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A2|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 16781900 - 16797739

NM_009201 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111301736669417367823
113111731737102417371066
117412181737169717371741
121912601737221917372260
126114211737512517375285
142216551737899517379228
165618501738110617381300
185119851738137217381506
198627581738285017383622

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4192790Full LengthBC037462solute carrier family 1 (neutral amino acid transporter), member 5
4209657Full LengthBC029873solute carrier family 1 (neutral amino acid transporter), member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033227  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009201 NP_033227 P51912 SDF

Related Sequences

 
mRNAGenPeptSwissProt
L42115 AAA66264 P51912
AF246130 AAG02180 Q9ESU7
BC029873 AAH29873 Q5U647
BC037462 AAH37462 Q9ESU7
D85044 BAA12716 P51912
AK148346 BAE28496 Q3UFR4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc1a5 NP_033227 R.norvegicus Slc1a5 292657   NP_786934 88
H.sapiens SLC1A5 6510 Gene Info NP_005619 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)