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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Irf1, interferon regulatory factor 1
Sequence ID:NM_001159393
NM_001159396
NM_008390
Entrez Gene ID:16362
Ensembl ID:ENSMUSG00000018899

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B1.3|11 29.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 53772280 - 53773195

 Exon Info From UCSC:
NM_001159393
NM_001159396
NM_008390

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3600525Full LengthBC003821interferon regulatory factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032416  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001159393 NP_001152865    
NM_001159396 NP_001152868    
NM_008390 NP_032416 Q5SX13
P15314
IRF

Related Sequences

 
mRNAGenPeptSwissProt
M21065 AAA39334 Q5SX13
P15314
BC003821 AAH03821 Q5SX13
P15314
AY225160 AAP49221  
AK152005 BAE30869 Q5SX13
P15314
AK152104 BAE30951 Q5SX13
P15314
AK152193 BAE31023 Q3U5M1
AK153514 BAE32057 Q3U5M1
AK155983 BAE33535 Q5SX13
P15314
AK157347 BAE34056 Q5SX13
P15314
CT010234 CAJ18442 Q4FK18

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Irf1 NP_001152868 R.norvegicus Irf1 24508   NP_036723 94
H.sapiens IRF1 3659 Gene Info NP_002189 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta