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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Casp1, caspase 1
Sequence ID:NM_009807
Entrez Gene ID:12362
Ensembl ID:ENSMUSG00000025888

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A1|9 1.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 5298685 - 5307273

NM_009807 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
120752985165298722
20847452992795299545
47553752998025299864
53865053024165302528
65182453029975303170
825105953035395303773
1060120053041865304326
1201131053061165306225
1311141453066695306772
1415151353071825307280

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3583883Full LengthBC008152caspase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033937  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009807 NP_033937 P29452 EC 3.4.22.36 CARD
Peptidase_C14

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
L28095 AAA20209 P29452 EC 3.4.22.36
L03799 AAA39306 P29452 EC 3.4.22.36
BC008152 AAH08152 P29452 EC 3.4.22.36

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Casp1 NP_033937 R.norvegicus Casp1 25166   NP_036894 90
H.sapiens CASP1 834 Gene Info NP_150634 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta