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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scarf1, scavenger receptor class F, member 1
Sequence ID:NM_001004157
Entrez Gene ID:380713
Ensembl ID:ENSMUSG00000038188

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B5|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 75513559 - 75526580

 Exon Info From UCSC:
NM_001004157

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6411836Full LengthBC080288scavenger receptor class F, member 1
6403057IncompleteBC057600scavenger receptor class F, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001004157  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001004157 NP_001004157 Q68EF1
Q5ND28
Laminin_EGF
EGF_2

Related Sequences

 
mRNAGenPeptSwissProt
BC080288 AAH80288 Q68EF1
AK220215 BAD90140 Q5ND28
AK133477 BAE21676 Q5ND28

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scarf1 NP_001004157 R.norvegicus Scarf1 303313   NP_001100492 91
H.sapiens SCARF1 8578 Gene Info NP_003684 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)