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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Wdr45l, Wdr45 like
Sequence ID:NM_025793
Entrez Gene ID:66840
Ensembl ID:ENSMUSG00000025173

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11 3.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 121327233 - 121354409

NM_025793 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11262121188516121189777
12631384121190106121190227
13851486121190639121190740
14871572121191460121191545
15731763121196697121196887
17641858121198289121198383
18591946121199870121199957
19472048121202427121202528
20492123121210545121210619
21242344121215540121215760

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3584839Full LengthBC004595Wdr45 like

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025793 NP_080069 Q9CR39  

Related Sequences

 
mRNAGenPeptSwissProt
BC004595 AAH04595 Q9CR39
AK002352 BAB22031 Q9CR39
AK013170 BAB28689 Q9CR39
AK146101 BAE26902 Q9CR39
AK151975 BAE30843 Q9CR39
AK168603 BAE40470 Q9CR39
AK170602 BAE41906 Q9CR39

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Wdr45l NP_080069 R.norvegicus Wdr45l 360682   NP_001034676 100
H.sapiens WDR45L 56270 Gene Info NP_062559 99
A.gambiae AgaP_AGAP012792 1268433   XP_560966 68
D.melanogaster CG11975 41074   NP_649853 68
A.thaliana ATG18C 818678   NP_181613 49
A.thaliana ATG18D 824811   NP_191203 47
S.cerevisiae HSV2 853138   NP_011739 43
P.falciparum PF10_0126 810284   XP_001347411 36
S.pombe SPAC458.06 2543338   NP_594700 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)