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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Chrna5, cholinergic receptor, nicotinic, alpha polypeptide 5
Sequence ID:NM_176844
Entrez Gene ID:110835
Ensembl ID:ENSMUSG00000035594

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 B|9 32.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 54998010 - 55006721

NM_176844 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12365482868654828921
2373885484581854845969
3894335484825854848302
4345435485020654850315
54413725485213754852965
137327385485422054855585

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40045716Full LengthBC106839cholinergic receptor, nicotinic, alpha polypeptide 5
40046382Full LengthBC106853cholinergic receptor, nicotinic, alpha polypeptide 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_789814  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_176844 NP_789814   Neur_chan_LBD
Neur_chan_memb

Related Sequences

 
mRNAGenPeptSwissProt
AF204689 AAF19423 Q9QXK6
BC106839 AAI06840 Q3KP94
BC106853 AAI06854 Q2MKA5
AY574264 AAS90360 Q2MKA5
DQ318788 ABC49856 Q2MKA5
AK080900 BAC38070 Q8BIE9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chrna5 NP_789814 R.norvegicus Chrna5 25102   NP_058774 98
H.sapiens CHRNA5 1138 Gene Info NP_000736 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)