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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cx3cl1, chemokine (C-X3-C motif) ligand 1
Sequence ID:NM_009142
Entrez Gene ID:20312
Ensembl ID:ENSMUSG00000031778

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8 C5|8 46.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:8: 94772242 - 94781087

NM_009142 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11559729607997296233
1562769730192797302047
27731439730345997306325

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3498747Full LengthBC006650chemokine (C-X3-C motif) ligand 1
6490082Full LengthBC054838chemokine (C-X3-C motif) ligand 1
4979606IncompleteBC057891chemokine (C-X3-C motif) ligand 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033168  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009142 NP_033168 O35188 IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF010586 AAB66331 O35188
U92565 AAB71763 O35188
AF071549 AAD41620 O35188
BC006650 AAH06650 O35188
BC054838 AAH54838 O35188
AB030188 BAA92752 Q9JMF8
AK040220 BAC30544 Q8C9Y1
AK138214 BAE23585 O35188
AK138472 BAE23673 O35188
AK138574 BAE23702 O35188
AK154646 BAE32737 O35188

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cx3cl1 NP_033168 R.norvegicus Cx3cl1 89808   NP_604450 85
H.sapiens CX3CL1 6376 Gene Info NP_002987 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)