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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Scn5a, sodium channel, voltage-gated, type V, alpha
Sequence ID:NM_001253860
Entrez Gene ID:20271
Ensembl ID:ENSMUSG00000032511

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F3-F4|9 70.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 119485229 - 119562672

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069451Full LengthBC172643sodium channel, voltage-gated, type V, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067519  

Protein Infomation

NM_001253860 NP_001240789    
NM_021544 NP_067519 Q9JJV9 Ion_trans

Related Sequences

BC172643 AAI72643  
GQ861509 ACW83021 D0ENM2
AK085822 BAC39544 Q8C3I3
AK147254 BAE27800 Q9JJV9
AK147517 BAE27966 Q9JJV9
AJ271477 CAB70096 Q9JJV9
AJ623273 CAF25043 Q6EWG4
AJ623274 CAF25044 Q6EWG3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Scn5a NP_067519 R.norvegicus Scn5a 25665   NP_037257 98
H.sapiens SCN5A 6331 Gene Info NP_001092874 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)