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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc38a1, solute carrier family 38, member 1
Sequence ID:NM_001166456
NM_001166458
NM_134086
Entrez Gene ID:105727
Ensembl ID:ENSMUSG00000023169

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 96576275 - 96624170

 Exon Info From UCSC:
NM_001166456
NM_001166458
NM_134086

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5375319Full LengthBC030378solute carrier family 38, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598847  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001166456 NP_001159928    
NM_001166458 NP_001159930    
NM_134086 NP_598847 Q8K2P7 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
AF184240 AAG43433 Q8K2P7
BC030378 AAH30378 Q8K2P7
BC066815 AAH66815 Q8K2P7
AK029189 BAC26341 Q8K2P7
AK034130 BAC28597 Q8K2P7
AK035098 BAC28944 Q8K2P7
AK047459 BAC33064 Q8K2P7
AK049294 BAC33663 Q8K2P7
AK050914 BAC34457 Q8K2P7
AK081724 BAC38310 Q8K2P7
AK143103 BAE25270 Q3TRW5
AK162429 BAE36911 Q3TRW5
AK162612 BAE36989 Q8K2P7
AK163914 BAE37532 Q8K2P7
AK165188 BAE38067 Q8K2P7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc38a1 NP_598847 R.norvegicus Slc38a1 170567   NP_620187 98
H.sapiens SLC38A1 81539 Gene Info NP_001070952 93
A.thaliana AT3G30390 822740   NP_001030795 30
A.thaliana AT5G38820 833873   NP_198698 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)