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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col5a2, collagen, type V, alpha 2
Sequence ID:NM_007737
Entrez Gene ID:12832
Ensembl ID:ENSMUSG00000026042

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C1|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 45374330 - 45375033

 Exon Info From UCSC:
NM_007737

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30059991Full LengthBC055077collagen, type V, alpha 2
5251707IncompleteBC043696collagen, type V, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031763  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007737 NP_031763 Q3U962 VWC
Collagen
COLFI

Related Sequences

 
mRNAGenPeptSwissProt
L02918 AAA37440 Q3U962
BC043696 AAH43696 Q3U962
BC055077 AAH55077 Q3U962
AK084285 BAC39155 Q8BNA3
AK132413 BAE21154 Q3U962
AK139130 BAE23896 Q3U962
AK147220 BAE27775 Q3U962
AK147328 BAE27850 Q3U962
AK151929 BAE30805 Q3U962
AK160008 BAE35556 Q3U962

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col5a2 NP_031763 R.norvegicus Col5a2 85250   NP_445940 97
H.sapiens COL5A2 1290 Gene Info NP_000384 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)