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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. C1galt1, core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
Sequence ID:NM_052993
Entrez Gene ID:94192
Ensembl ID:ENSMUSG00000042460

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 A1|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 7845263 - 7871455

NM_052993 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
117177952237795393
17240878139047814140
409107678163757817042
1077206478210537822040

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30077842Full LengthBC064767core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
5040878IncompleteBC025899core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_052993 NP_443719 Q9JJ06 EC 2.4.1.122  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF157962 AAF81982 Q9JJ06 EC 2.4.1.122
BC025899 AAH25899 Q9JJ06 EC 2.4.1.122
BC064767 AAH64767 Q9JJ06 EC 2.4.1.122

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus C1galt1 NP_443719 R.norvegicus C1galt1 65044   NP_075239 94
H.sapiens C1GALT1 56913 Gene Info NP_064541 89
A.gambiae AgaP_AGAP009979 1279400   XP_319116 53
D.melanogaster C1GalTA 34215   NP_609258 51
C.elegans C38H2.2 176455   NP_499293 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)