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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. 0610009D07Rik, RIKEN cDNA 0610009D07 gene
Sequence ID:NM_025323
Entrez Gene ID:66055
Ensembl ID:ENSMUSG00000037361

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 A1.1|12

Chromosomal Position (from UCSC)

Chromosomal Position:12: 4817560 - 4827258

NM_025323 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
121248244134824624
21333148273994827517
33247048335634833701
471111648338194834464

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4458983Full LengthBC019535RIKEN cDNA 0610009D07 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079599  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025323 NP_079599 P59708 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC019535 AAH19535 P59708
AK002375 BAB22052 P59708
AK003683 BAB22936 P59708
AK151648 BAE30577 P59708

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 0610009D07Rik NP_079599 H.sapiens SF3B14 51639 Gene Info NP_057131 100
D.melanogaster CG13298 38720   NP_648037 77
A.gambiae AgaP_AGAP002780 1273189   XP_312143 74
P.falciparum PFL1200c 811292   XP_001350646 71
C.elegans C50D2.5 173394   NP_493659 68
S.pombe SPBC29A3.07c 2540462   NP_595835 68
A.thaliana AT5G12190 831092   NP_196780 64
N.crassa NCU02837 3880276   XP_964127 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)