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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tnrc6a, trinucleotide repeat containing 6a
Sequence ID:NM_144925
Entrez Gene ID:233833
Ensembl ID:ENSMUSG00000052707

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 123124198 - 123143781

 Exon Info From UCSC:
NM_144925

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3599820IncompleteBC005741trinucleotide repeat containing 6a
4037806IncompleteBC026849trinucleotide repeat containing 6a

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_144925 NP_659174    

Related Sequences

 
mRNAGenPeptSwissProt
BC005741 AAH05741 Q99JR3
BC026849 AAH26849 Q05CE3
AK044679 BAC32030 Q8BXM6
AK050601 BAC34334 Q8BWM2
AK083848 BAC39039 Q8BNF0
AK129366 BAC98176 Q6ZPQ4
AK138426 BAE23657 Q3UUG8
AK142808 BAE25197 Q3UQ45
AK142809 BAE25198 Q3UQ45
AK147327 BAE27849 Q3UHK8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tnrc6a NP_659174 R.norvegicus Tnrc6a 308971   NP_001101019 98
H.sapiens TNRC6A 27327 Gene Info NP_055309 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)