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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atrx, alpha thalassemia/mental retardation syndrome X-linked homolog (human)
Sequence ID:NM_009530
Entrez Gene ID:22589
Ensembl ID:ENSMUSG00000031229

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:X D|X 43.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 105800152 - 105929342

 Exon Info From UCSC:
NM_009530

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033556  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009530 NP_033556 Q61687 EC 3.6.4.12 SNF2_N
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF026032 AAC08741 Q61687 EC 3.6.4.12
AK032955 BAC28096 Q8BSH0  
AK080333 BAC37880 Q8C4Z6  
AK088095 BAC40142 Q8C2S3  
AK134024 BAE21982 Q3UZ76  
AK135019 BAE22387 Q3UY26  
AK138878 BAE23807 Q3UU22  
AK161784 BAE36571 Q3TSV4  
AK164705 BAE37884 Q3TP53  
AK172134 BAE42840 Q3TA30  
X99643 CAA67962 Q61687 EC 3.6.4.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atrx NP_033556 R.norvegicus Atrx 246284   NP_001099227 98
H.sapiens ATRX 546 Gene Info NP_000480 85
A.gambiae AgaP_AGAP002490 1273471   XP_312449 51
D.melanogaster XNP 43080   NP_651398 43
C.elegans xnp-1 172077   NP_001020958 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)