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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cxcl13, chemokine (C-X-C motif) ligand 13
Sequence ID:NM_018866
Entrez Gene ID:55985
Ensembl ID:ENSMUSG00000023078

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 E3|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 95956946 - 95960432

NM_018866 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1939638595796386049
942269638765096387782
2273079638889996388979
30811629638923296390086

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4217539Full LengthBC012965chemokine (C-X-C motif) ligand 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061354  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018866 NP_061354 Q3U1E8
O55038
IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF044196 AAC14401 Q3U1E8
O55038
AF030636 AAC34603 Q9QX28
BC012965 AAH12965 Q3U1E8
O55038
AK156025 BAE33550 Q3U1E8
O55038

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcl13 NP_061354 R.norvegicus Cxcl13 498335   NP_001017496 69
H.sapiens CXCL13 10563 Gene Info NP_006410 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)