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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hcrt, hypocretin
Sequence ID:NM_010410
Entrez Gene ID:15171
Ensembl ID:ENSMUSG00000045471

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11 61.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 100761692 - 100762931

NM_010410 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1473100623006100623478
474584100624134100624244

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40126262Full LengthBC116943hypocretin
40126288Full LengthBC116969hypocretin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034540  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010410 NP_034540 Q547R2
O55241
Orexin

Related Sequences

 
mRNAGenPeptSwissProt
AF019566 AAC02934 Q547R2
O55241
AF041242 AAC40040 Q547R2
O55241
BC116943 AAI16944 Q547R2
BC116969 AAI16970 Q547R2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hcrt NP_034540 R.norvegicus Hcrt 25723   NP_037311 95
H.sapiens HCRT 3060 Gene Info NP_001515 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)