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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ptgds, prostaglandin D2 synthase (brain)
Sequence ID:NM_008963
Entrez Gene ID:19215
Ensembl ID:ENSMUSG00000015090

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2 12.9 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 25466711 - 25469729

NM_008963 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11202532223125322350
1211792532280625322864
1802812532333725323438
2823982532359125323707
3994752532435225324428
4766152532450725324646
6168052532507925325268

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4481308Full LengthBC038083prostaglandin D2 synthase (brain)
5683706Full LengthBC043015prostaglandin D2 synthase (brain)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032989  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_008963 NP_032989 O09114 EC 5.3.99.2 Lipocalin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC038083 AAH38083 O09114 EC 5.3.99.2
BC043015 AAH43015 Q3V2G5
O09114
EC 5.3.99.2
AB006361 BAA21769 O09114 EC 5.3.99.2
AK131859 BAE20833 Q3V2G5
O09114
EC 5.3.99.2
X89222 CAA61506 Q3V2G5
O09114
EC 5.3.99.2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ptgds NP_032989 R.norvegicus Ptgds 25526   NP_037147 88
H.sapiens PTGDS 5730 Gene Info NP_000945 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)