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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rdh16, retinol dehydrogenase 16
Sequence ID:NM_009040
Entrez Gene ID:19683
Ensembl ID:ENSMUSG00000069456

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 D3|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 127801153 - 127815839

NM_009040 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1358127238208127238565
359617127248109127248367
618781127249841127250004
7823208127250468127252894

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6763439Full LengthBC089612retinol dehydrogenase 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033066  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009040 NP_033066 O54909 adh_short

Related Sequences

 
mRNAGenPeptSwissProt
AF030513 AAB97166 O54909
BC089612 AAH89612 O54909
AK164728 BAE37892 Q3TP45

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rdh16 NP_033066 M.musculus Rdh9 103142 Gene Info NP_694773 95
M.musculus Rdh1 107605 Gene Info NP_536684 91
M.musculus Rdh19 216453 Gene Info NP_671755 91
M.musculus BC089597 216454 Gene Info NP_663399 89
R.norvegicus Rdh2 299511   NP_954678 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)