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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC7A5, solute carrier family 7 (amino acid transporter light chain, L system), member 5
Sequence ID:NM_003486
Entrez Gene ID:8140
Ensembl ID:ENSG00000103257

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 87866523 - 87903044

NM_003486 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
230038786362987866630
300431818786801987868196
318233318787010387870252
333234288787145087871546
342935328787231987872422
353336568787330787873430
365737018787403487874078
370238078787465587874760
380839338788532987885454
393445438790249087903099

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4470593Full LengthBC042600solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
5551612Full LengthBC039692solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
4580018IncompleteBC014177solute carrier family 7 (cationic amino acid transporter, y+ system), member 5

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003486 NP_003477 Q01650  

Related Sequences

 
mRNAGenPeptSwissProt
M80244 AAA35780 Q01650
AF077866 AAC61479 Q01650
AF104032 AAD20464 Q01650
BC039692 AAH39692 Q8IV97
BC042600 AAH42600 Q01650
DQ893338 ABM84264  
DQ896766 ABM87765  
AB018542 BAA33851 Q01650
AB017908 BAA75746 Q01650
AB018009 BAA84648 Q01650

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC7A5 NP_003477 R.norvegicus Slc7a5 50719   NP_059049 93
M.musculus Slc7a5 20539 Gene Info NP_035534 92
D.melanogaster JhI-21 34624   NP_609542 53
A.gambiae AgaP_AGAP012643 1269049   XP_307630 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)