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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CUX1, cut-like homeobox 1
Sequence ID:NM_001202543
NM_001202544
NM_001202545
NM_001202546
NM_001913
NM_181500
NM_181552
RefSeqGene ID:NG_029476
Entrez Gene ID:1523
Ensembl ID:ENSG00000257923

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 101713617 - 101927250

 Exon Info From UCSC:
NM_001913
NM_181500
NM_181552

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5740343Full LengthBC066592cut-like homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_853530  NP_001904  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001202543 NP_001189472    
NM_001202544 NP_001189473    
NM_001202545 NP_001189474    
NM_001202546 NP_001189475    
NM_001913 NP_001904 Q13948 CASP_C
NM_181500 NP_852477    
NM_181552 NP_853530 P39880 Homeobox
CUT

Related Sequences

 
mRNAGenPeptSwissProt
L12579 AAA35654 Q13948
BC025422 AAH25422 Q13948
BC066592 AAH66592 P39880
AK222832 BAD96552 Q13948
AB075522 BAE45765 Q3LIA3
AK122726 BAG53691 B3KV79
AK125097 BAG54140 B3KWH8
AK297548 BAG59942 B4DMN0
AK303151 BAG64254 B4DZZ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CUX1 NP_001189472 R.norvegicus Cux1 116639   XP_347164 91
M.musculus Cux1 13047 Gene Info NP_034116 86
C.elegans ceh-44 175372   NP_497576 24

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)