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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. USP16, Ubiquitin specific peptidase 16
Sequence ID:NM_001032410
NM_006447
NM_001001992
Entrez Gene ID:10600
Ensembl ID:ENSG00000156256

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 30408661 - 30426807

 Exon Info From UCSC:
NM_001032410
NM_006447
NM_001001992

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4824914Full LengthBC030777ubiquitin specific peptidase 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006438  NP_001001992  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001001992 NP_001001992     UCH
zf-UBP
NM_001032410 NP_001027582 Q9Y5T5 EC 3.4.19.12  
NM_006447 NP_006438 Q9Y5T5 EC 3.4.19.12 UCH
zf-UBP

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF126736 AAD20949 Q9Y5T5 EC 3.4.19.12
AF113219 AAG39290 Q9Y5T5 EC 3.4.19.12
BC030777 AAH30777 Q9Y5T5 EC 3.4.19.12
AY333928 AAR13293 Q9Y5T5 EC 3.4.19.12
DQ892395 ABM83321    
DQ895610 ABM86536    
AK222681 BAD96401 Q9Y5T5 EC 3.4.19.12
AK222884 BAD96604 Q9Y5T5 EC 3.4.19.12
AK023247 BAG51175 Q9Y5T5 EC 3.4.19.12
AK294284 BAG57569 Q9Y5T5 EC 3.4.19.12
AK300771 BAG62436 B4DUS4  
AK302247 BAG63599 Q9Y5T5 EC 3.4.19.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens USP16 NP_001001992 M.musculus Usp16 74112 Gene Info NP_077220 84
R.norvegicus Usp16 288306   NP_001093971 84
S.pombe ubp7 2541845   NP_593108 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)