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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX17, SRY (sex determining region Y)-box 17
Sequence ID:NM_022454
RefSeqGene ID:NG_028171
Entrez Gene ID:64321
Ensembl ID:ENSG00000164736

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 55370695 - 55372964

NM_022454 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15115537049455371004
51223495537161755373454

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5220550IncompleteBC030209SRY (sex determining region Y)-box 17
30928303IncompleteBC111365SRY (sex determining region Y)-box 17
100014329BC140307SRY (sex determining region Y)-box 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071899  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022454 NP_071899 Q9H6I2 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC030209 AAH30209 Q2T9L5
BC111365 AAI11366 Q2T9L5
BC111770 AAI11771 Q2NKK5
BC140307 AAI40308  
AK025905 BAB15277 Q9H6I2
AB073988 BAB83867 Q9H6I2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX17 NP_071899 M.musculus Sox17 20671 Gene Info NP_035571 85
R.norvegicus Sox17 312936   NP_001101372 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)