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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATF5, activating transcription factor 5
Sequence ID:NM_001193646
NM_012068
RefSeqGene ID:NG_021170
Entrez Gene ID:22809
Ensembl ID:ENSG00000169136

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 50432459 - 50437191

 Exon Info From UCSC:
NM_001193646
NM_012068

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3504701Full LengthBC005174activating transcription factor 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036200  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001193646 NP_001180575    
NM_012068 NP_036200 Q9Y2D1 bZIP_1
bZIP_2

Related Sequences

 
mRNAGenPeptSwissProt
AF101388 AAD28370 Q9Y2D1
AF305687 AAG22558 Q9Y2D1
BC005174 AAH05174 Q9Y2D1
AB021663 BAA78477 Q9Y2D1
AB073613 BAD38650 Q9Y2D1
AK290592 BAF83281 A8K3H7
AK024402 BAG51295 Q9Y2D1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATF5 NP_001180575 R.norvegicus Atf5 282840   NP_758839 89
M.musculus Atf5 107503 Gene Info NP_109618 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)