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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX15, SRY (sex determining region Y)-box 15
Sequence ID:NM_006942
RefSeqGene ID:NG_009204
Entrez Gene ID:6665
Ensembl ID:ENSG00000129194

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17p12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 7491497 - 7493488

NM_006942 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
136774914977491863
368139474924617493487

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3447385Full LengthBC000985SRY (sex determining region Y)-box 15
4653140Full LengthBC072003SRY (sex determining region Y)-box 15

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008873  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006942 NP_008873 O60248 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC000985 AAH00985 O60248
BC072003 AAH72003 O60248
DQ890736 ABM81662  
DQ893908 ABM84834  
AB006867 BAA25663 O60248
AJ006222 CAA06920 O60248

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX15 NP_008873 M.musculus Sox15 20670 Gene Info NP_033261 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)