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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEC11A, SEC11 homolog A (S. cerevisiae)
Sequence ID:NM_014300
Entrez Gene ID:23478
Ensembl ID:ENSG00000140612

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 85212774 - 85259384

NM_014300 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
175428521277485213299
5436008521395585214012
6017208522394385224062
7218708523085585231004
8719808523476585234874
98113998525925585259673

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2964504Full LengthBC000359SEC11 homolog A (S. cerevisiae)
4865656Full LengthBC014508SEC11 homolog A (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055115  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_014300 NP_055115 P67812 EC 3.4.21.89 Peptidase_S24

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF090315 AAC36354 P67812 EC 3.4.21.89
AF061737 AAD17526 P67812 EC 3.4.21.89
AF108945 AAD19640 P67812 EC 3.4.21.89
BC000359 AAH00359 P67812 EC 3.4.21.89
BC014508 AAH14508 P67812 EC 3.4.21.89
AF087906 AAP97204 Q7Z4Z6  
DQ891826 ABM82752    
AB209437 BAD92674 Q59FM3  
AK223224 BAD96944 P67812 EC 3.4.21.89
AK314146 BAG36834 P67812 EC 3.4.21.89
AK300693 BAG62376 B4DUL4  
CR457127 CAG33408 Q6IAM7  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEC11A NP_055115 M.musculus Sec11a 56529 Gene Info NP_064335 99
R.norvegicus Sec11a 65166   NP_113911 99
A.thaliana AT1G52600 841692   NP_175669 58
N.crassa NCU04519 3873068   XP_956930 54
S.cerevisiae SEC11 854840   NP_012288 48
S.pombe sec11 2539654   NP_595207 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)