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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC10A1, solute carrier family 10 (sodium/bile acid cotransporter family), member 1
Sequence ID:NM_003049
Entrez Gene ID:6554
Ensembl ID:ENSG00000100652

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 70242998 - 70264001

NM_003049 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15547024255170243104
5557517024504970245245
7529307024589870246076
93111417025281370253023
114216317026351670264005

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262603Full LengthBC069822solute carrier family 10 (sodium/bile acid cotransporter family), member 1
7262615Full LengthBC069799solute carrier family 10 (sodium/bile acid cotransporter family), member 1
8992014Full LengthBC126298solute carrier family 10 (sodium/bile acid cotransporter family), member 1
9020342Full LengthBC136355solute carrier family 10 (sodium/bile acid cotransporter family), member 1
30915174Full LengthBC074724solute carrier family 10 (sodium/bile acid cotransporter family), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003040  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003049 NP_003040 Q14973 SBF

Related Sequences

 
mRNAGenPeptSwissProt
L21893 AAA36381 Q14973
BC069799 AAH69799 Q14973
BC069822 AAH69822 Q14973
BC074724 AAH74724 Q14973
BC126298 AAI26299 Q14973
BC136355 AAI36356 Q14973
AY544127 AAT11158 Q14973
HQ447437 ADQ31923  
HQ258189 ADR82943  
JQ814895 AFL02669  
AK314028 BAG36738 B2RA41

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC10A1 NP_003040 R.norvegicus Slc10a1 24777   NP_058743 79
M.musculus Slc10a1 20493 Gene Info NP_001171032 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)