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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IFNB1, interferon, beta 1, fibroblast
Sequence ID:NM_002176
Entrez Gene ID:3456
Ensembl ID:ENSG00000171855

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 21077306 - 21077868

NM_002176 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
28402107710421077942

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262165Full LengthBC069314interferon, beta 1, fibroblast
40002940Full LengthBC096150interferon, beta 1, fibroblast
40002941Full LengthBC096151interferon, beta 1, fibroblast
40002943Full LengthBC096152interferon, beta 1, fibroblast
40002945Full LengthBC096153interferon, beta 1, fibroblast

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002167  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002176 NP_002167 P01574
Q5VWC9
Interferon

Related Sequences

 
mRNAGenPeptSwissProt
M28622 AAA36040 P01574
Q5VWC9
M25460 AAC41702 Q15943
BC069314 AAH69314 P01574
Q5VWC9
BC096150 AAH96150 P01574
Q5VWC9
BC096151 AAH96151 P01574
Q5VWC9
BC096152 AAH96152 P01574
Q5VWC9
BC096153 AAH96153 P01574
Q5VWC9
AB451323 BAG70137 Q5VWC9
AB451452 BAG70266 Q5VWC9
V00546 CAA23807 P01574
Q5VWC9
V00547 CAA23808 P01574
Q5VWC9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFNB1 NP_002167 M.musculus Ifnb1 15977 Gene Info NP_034640 50
R.norvegicus Ifnb1 24481   NP_062000 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta