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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCNT1, cyclin T1
Sequence ID:NM_001240
Entrez Gene ID:904
Ensembl ID:ENSG00000129315

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 49086815 - 49110458

NM_001240 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
114684908675149088218
146915394908954149089611
154017034908978149089944
170417494909192049091965
175018124909356049093622
181318734909479549094855
187420024909955049099678
200320844910822549108306
208525684911029749110780

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069237Full LengthBC172543cyclin T1
100063086BC156506cyclin T1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001231  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001240 NP_001231 O60563 Cyclin_N

Related Sequences

 
mRNAGenPeptSwissProt
AF045161 AAC39638 O60563
AF048730 AAC39664 O60563
BC156506 AAI56507  
BC172543 AAI72543  
EF688064 ABV58572 A9XU13
AK290990 BAF83679 A8K4M5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCNT1 NP_001231 M.musculus Ccnt1 12455 Gene Info NP_033963 90
R.norvegicus Ccnt1 315291   NP_001101580 90
A.gambiae AgaP_AGAP006678 1277267   XP_316716 42
D.melanogaster CycT 39961   NP_524127 39
A.thaliana CYCT1;4 827702   NP_193695 31
A.thaliana AT5G45190 834555   NP_199332 29
C.elegans cit-1.2 176126   NP_498745 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)