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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARID5A, AT rich interactive domain 5A (MRF1-like)
Sequence ID:NM_212481
Entrez Gene ID:10865
Ensembl ID:ENSG00000196843

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 97202488 - 97218370

NM_212481 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11049720246397202566
1052209721313897213253
2213599721505797215195
3604129721548997215541
4135109721592497216021
5116709721631097216469
67122059721683597218369

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068163Full LengthBC167773AT rich interactive domain 5A (MRF1-like)
5295251IncompleteBC047390AT rich interactive domain 5A (MRF1-like)
30409017IncompleteBC067301AT rich interactive domain 5A (MRF1-like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_997646  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_212481 NP_997646 Q03989 ARID

Related Sequences

 
mRNAGenPeptSwissProt
M62324 AAA36325 Q03989
BC167773 AAI67773  
AY358167 AAQ88534 Q6UXX8
AK300173 BAG61953 B4DTE1
AK304566 BAH14217 B7Z981

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARID5A NP_997646 M.musculus Arid5a 214855 Gene Info NP_001165677 78
R.norvegicus Arid5a 316327   NP_001030106 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)