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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EXOSC9, exosome component 9
Sequence ID:NM_001034194
NM_005033
RefSeqGene ID:NG_029848
Entrez Gene ID:5393
Ensembl ID:ENSG00000123737

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q27Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 122722474 - 122738064

 Exon Info From UCSC:
NM_001034194
NM_005033

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860413Full LengthBC142978exosome component 9
100000916BC140038exosome component 9
100013650BC140039exosome component 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005024  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001034194 NP_001029366    
NM_005033 NP_005024 Q06265 RNase_PH
RNase_PH_C

Related Sequences

 
mRNAGenPeptSwissProt
U09215 AAA18832 Q06265
M58460 AAA58384 Q06265
BC140038 AAI40039  
BC140039 AAI40040  
BC142978 AAI42979 A5PLM5
AK301967 BAG63380 B4DXG8
AJ505989 CAD44530 Q06265
AJ517294 CAD56889 Q06265

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EXOSC9 NP_005024 R.norvegicus Exosc9 294975   NP_001020577 93
M.musculus Exosc9 50911 Gene Info NP_062266 92
A.gambiae AgaP_AGAP002348 1273616   XP_312616 47
A.thaliana RRP45a 820485   NP_001030684 44
S.pombe SPCC757.08 2539106   NP_587683 44
N.crassa NCU00334 3873975   XP_957805 44
A.thaliana CER7 825221   NP_001190143 42
S.cerevisiae RRP45 851874   NP_010566 36
D.melanogaster Rrp45 32665   NP_573163 35
C.elegans exos-9 176012   NP_741217 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)