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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NPTXR, neuronal pentraxin receptor
Sequence ID:NM_014293
NM_058178
Entrez Gene ID:23467
Ensembl ID:ENSG00000221890

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 39214462 - 39215846

Transcript StartTranscript EndChromosomal Start Chromosomal End
243823921445739218837
438345623921908739219266
456348103922250439222751
481150363922429139224516
503758143923923939240016

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016404Full LengthBC153027neuronal pentraxin receptor
100015637BC148601neuronal pentraxin receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055108  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014293 NP_055108 O95502 Pentaxin

Related Sequences

 
mRNAGenPeptSwissProt
BC148601 AAI48602  
BC153027 AAI53028  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NPTXR NP_055108 M.musculus Nptxr 73340 Gene Info NP_109614 90
R.norvegicus Nptxr 81005   NP_110468 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)