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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LIN7C, lin-7 homolog C (C. elegans)
Sequence ID:NM_018362
Entrez Gene ID:55327
Ensembl ID:ENSG00000148943

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11p14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 27516123 - 27518351

NM_018362 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2144012751597027520350
440246112752090527521114
461246832752304127523112
468448022752334827523466
480348662752826227528325

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6502685Full LengthBC053907lin-7 homolog C (C. elegans)
4132182IncompleteBC009774lin-7 homolog C (C. elegans)
5312672IncompleteBC039459lin-7 homolog C (C. elegans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060832  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018362 NP_060832 Q9NUP9 PDZ
L27

Related Sequences

 
mRNAGenPeptSwissProt
AF090900 AAF24024 Q9UI80
BC053907 AAH53907 Q9NUP9
AK002077 BAA92072 Q9NUP9
AK223156 BAD96876 Q53FX5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIN7C NP_060832 M.musculus Lin7c 22343 Gene Info NP_035829 100
R.norvegicus Lin7c 60442   NP_068623 100
A.gambiae AgaP_AGAP005858 1276526   XP_315884 82
D.melanogaster veli 43003   NP_651330 80
C.elegans lin-7 175089   NP_001122664 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)