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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GABRA6, gamma-aminobutyric acid (GABA) A receptor, alpha 6
Sequence ID:NM_000811
Entrez Gene ID:2559
Ensembl ID:ENSG00000145863

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 161116540 - 161129599

NM_000811 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1376161112657161113032
377495161113235161113353
496563161113941161114008
564784161115954161116174
785867161116259161116341
8681011161116641161116784
10121164161117206161117358
11651424161118946161119205
14252519161128503161129597

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40005676Full LengthBC096241gamma-aminobutyric acid (GABA) A receptor, alpha 6
40005678Full LengthBC099640gamma-aminobutyric acid (GABA) A receptor, alpha 6
40005679Full LengthBC099641gamma-aminobutyric acid (GABA) A receptor, alpha 6
40005680Full LengthBC096242gamma-aminobutyric acid (GABA) A receptor, alpha 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000802  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000811 NP_000802 Q16445 Neur_chan_LBD
Neur_chan_memb

Related Sequences

 
mRNAGenPeptSwissProt
S81944 AAB36480 Q16445
BC096241 AAH96241 Q16445
BC096242 AAH96242 Q16445
BC099640 AAH99640 Q16445
BC099641 AAH99641 Q16445
AK289461 BAF82150 Q16445
AK090735 BAG52222 B3KR10

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GABRA6 NP_000802 R.norvegicus Gabra6 29708   NP_068613 92
M.musculus Gabra6 14399 Gene Info NP_001093111 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta