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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. UBTF, Upstream binding transcription factor, RNA polymerase I
Sequence ID:NM_014233
NM_001076684
NM_001076683
RefSeqGene ID:NG_029864
Entrez Gene ID:7343
Ensembl ID:ENSG00000108312

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 42282402 - 42283874

 Exon Info From UCSC:
NM_014233
NM_001076684
NM_001076683

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4509695Full LengthBC042297upstream binding transcription factor, RNA polymerase I
4341587IncompleteBC031423upstream binding transcription factor, RNA polymerase I

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055048  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001076683 NP_001070151    
NM_001076684 NP_001070152    
NM_014233 NP_055048 P17480 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC031423 AAH31423 Q05BZ1
BC042297 AAH42297 P17480
AF289595 AAL55779 Q8WYZ7
AK291733 BAF84422 P17480
AK292518 BAF85207 P17480
AK292577 BAF85266 A8K962
AK296917 BAG59472 B4DLB0
AK298008 BAG60313 B4DNQ1
X53390 CAA37469 P17480
X53461 CAA37548 P17480
X56687 CAA40016 P17480

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UBTF NP_055048 M.musculus Ubtf 21429 Gene Info NP_035681 98
R.norvegicus Ubtf 25574   NP_001121162 98
A.thaliana AT4G23800 828480   NP_194111 29
A.thaliana AT4G11080 826709   NP_192846 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)