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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MSX2, msh homeobox 2
Sequence ID:NM_002449
RefSeqGene ID:NG_008124
Entrez Gene ID:4488
Ensembl ID:ENSG00000120149

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CRANIOSYNOSTOSIS, TYPE 2 
PARIETAL FORAMINA 1ALX4
PARIETAL FORAMINA WITH CLEIDOCRANIAL DYSPLASIA 

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 174151639 - 174156888

NM_002449 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1467174151574174152040
4682207174156161174157900

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3903028Full LengthBC015509msh homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002440  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002449 NP_002440   Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
S75361 AAB33867 P35548
BC015509 AAH15509 P35548
BT009814 AAP88816 P35548
DQ891600 ABM82526  
DQ894795 ABM85721  
D14970 BAA03611 P35548
D31771 BAA06549 P35548
D89377 BAA13949 P35548
X69295 CAA49156 P35548

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MSX2 NP_002440 M.musculus Msx2 17702 Gene Info NP_038629 93
R.norvegicus Msx2 25483   NP_037114 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)