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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VPS39, vacuolar protein sorting 39 homolog (S. cerevisiae)
Sequence ID:NM_015289
Entrez Gene ID:23339
Ensembl ID:ENSG00000166887

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q15.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 42450910 - 42500475

 Exon Info From UCSC:
NM_015289

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5295166Full LengthBC068559vacuolar protein sorting 39 homolog (S. cerevisiae)
3938667IncompleteBC015817vacuolar protein sorting 39 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056104  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015289 NP_056104   CNH

Related Sequences

 
mRNAGenPeptSwissProt
BC015817 AAH15817 Q96JC1
BC068559 AAH68559 Q96JC1
AF280814 AAK72222 Q96JC1
AF281052 AAQ05978 Q96JC1
AB018313 BAA34490 Q96JC1
AK128403 BAG54672 B3KY10
BX537404 CAD97646 Q96JC1
AM392538 CAL37416  
AM393769 CAL38644  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS39 NP_056104 M.musculus Vps39 269338 Gene Info NP_671495 97
R.norvegicus Vps39 362199   NP_001012186 97
A.gambiae AgaP_AGAP002498 1273464   XP_312442 44
D.melanogaster CG7146 42192   NP_650702 39
C.elegans vps-39 179902   NP_001123010 33
A.thaliana EMB2754 829815   NP_195381 32
N.crassa NCU01539 3872402   XP_956242 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)