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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SORD, Sorbitol dehydrogenase
Sequence ID:NM_003104
Entrez Gene ID:6652
Ensembl ID:ENSG00000140263

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q15.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 45115604 - 45117773

NM_003104 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12464531530145315546
2472804533260545332638
2814454533545445335618
4466054535326445353423
6067244535746845357586
7257904536037845360443
7919664536107445361249
96710884536451445364635
108928134536556245367286

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2989137Full LengthBC021085sorbitol dehydrogenase
5428022Full LengthBC025295sorbitol dehydrogenase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003095  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_003104 NP_003095 Q00796 EC 1.1.1.14 ADH_zinc_N
ADH_N

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U07361 AAA66064 Q00796 EC 1.1.1.14
L29008 AAA80565 Q00796 EC 1.1.1.14
BC021085 AAH21085 Q00796 EC 1.1.1.14
BC025295 AAH25295 Q00796 EC 1.1.1.14
DQ892769 ABM83695    
DQ896016 ABM87015    
AK312444 BAG35352 Q00796 EC 1.1.1.14
AK296574 BAG59194 B4DKI2  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SORD NP_003095 M.musculus Sord 20322 Gene Info NP_666238 83
R.norvegicus Sord 24788   NP_058748 82
A.gambiae AgaP_AGAP003584 1274249   XP_313338 58
D.melanogaster Sodh-2 41313   NP_524311 56
D.melanogaster Sodh-1 40836   NP_477348 56
C.elegans R04B5.5 179405   NP_505591 54
C.elegans R04B5.6 179404   NP_505590 50
A.thaliana AT5G51970 835272   NP_200010 47
S.cerevisiae SOR2 851351   NP_010035 44
N.crassa NCU00891 3880931   XP_964807 44
S.cerevisiae SOR1 853624   NP_012693 44
S.pombe tms1 2540119   NP_595120 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)