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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDR42E1, short chain dehydrogenase/reductase family 42E, member 1
Sequence ID:NM_145168
Entrez Gene ID:93517
Ensembl ID:ENSG00000184860

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 82031257 - 82033016

NM_145168 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1925968203125182033828
259726908203439582034488
269127928204499182045092

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4517213Full LengthBC019670short chain dehydrogenase/reductase family 42E, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_660151  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145168 NP_660151 Q8WUS8 3Beta_HSD

Related Sequences

 
mRNAGenPeptSwissProt
AF161368 AAF28928 Q8WUS8
BC019670 AAH19670 Q8WUS8
DQ891286 ABM82212  
HQ447285 ADQ31772  
AK315652 BAG38018 Q8WUS8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDR42E1 NP_660151 M.musculus Sdr42e1 74032 Gene Info NP_083001 80
R.norvegicus Sdr42e1 307897   XP_226509 80
A.thaliana AT2G33630 817929   NP_180921 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)