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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GGA3, golgi-associated, gamma adaptin ear containing, ARF binding protein 3
Sequence ID:NM_001172703
NM_001172704
NM_014001
NM_138619
NR_033345
Entrez Gene ID:23163
Ensembl ID:ENSG00000125447

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 73232694 - 73257676

 Exon Info From UCSC:
NM_001172703
NM_001172704
NM_014001
NM_138619

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4814878Full LengthBC070044golgi associated, gamma adaptin ear containing, ARF binding protein 3
4821620IncompleteBC063285golgi associated, gamma adaptin ear containing, ARF binding protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_054720  NP_619525  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001172703 NP_001166174    
NM_001172704 NP_001166175    
NM_014001 NP_054720   VHS
Alpha_adaptinC2
GAT
NM_138619 NP_619525 Q9NZ52 VHS
Alpha_adaptinC2
GAT

Related Sequences

 
mRNAGenPeptSwissProt
AF190864 AAF05709 Q9NZ52
AF219138 AAF42848 Q9NZ52
AF219139 AAF42849 Q9NZ52
BC070044 AAH70044 Q9NZ52
D63876 BAA09926 Q9NZ52
AK291651 BAF84340 A8K6I6
AK291685 BAF84374 A8K6M0
AK293291 BAH11485 B7Z1E9
AK296843 BAH12442 B7Z456
AK301895 BAH13578 B7Z7E2
AK302278 BAH13665 B7Z7M9
AK302423 BAH13705 B7Z7R9
AK304692 BAH14238 B7Z9A2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GGA3 NP_619525 M.musculus Gga3 260302 Gene Info NP_766636 88
R.norvegicus Gga3 360658   NP_001101774 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)