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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CD180, CD180 molecule
Sequence ID:NM_005582
Entrez Gene ID:4064
Ensembl ID:ENSG00000134061

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 66478684 - 66492627

NM_005582 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1123206647810366480412
232124876648167866481844
248827256649237966492616

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40034168Full LengthBC109069CD180 molecule
40034172Full LengthBC109070CD180 molecule

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005573  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005582 NP_005573 Q99467 LRR_1
LRRCT

Related Sequences

 
mRNAGenPeptSwissProt
BC109069 AAI09070 Q99467
BC109070 AAI09071 Q99467
D83597 BAA12019 Q99467
AK313177 BAG35994 Q99467

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CD180 NP_005573 M.musculus Cd180 17079 Gene Info NP_032559 74
R.norvegicus Cd180 294706   NP_001099875 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)